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    RPS9 ribosomal protein S9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843836, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPS9
    Official Full Name
    ribosomal protein S9
    Primary source
    TAIR:AT1G74970
    Locus tag
    AT1G74970
    See related
    Araport:AT1G74970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25A4.6; F25A4_6; ribosomal protein S9; RIBOSOMAL PROTEIN S9; TWN3
    Summary
    ribosomal protein S9, nuclear encoded component of the chloroplast ribosome
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    Genomic context

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    See RPS9 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (28157386..28159317, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene TIFY domain/Divergent CCT motif family protein Neighboring gene fatty acid biosynthesis 1 Neighboring gene RING/U-box superfamily protein Neighboring gene GNS1/SUR4 membrane protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel plant nuclear gene encoding chloroplast ribosomal protein S9 has a transit peptide related to that of rice chloroplast ribosomal protein L12. Arimura S, et al. FEBS Lett, 1999 May 7. PMID 10359080
    2. Redox Conformation-Specific Protein-Protein Interactions of the 2-Cysteine Peroxiredoxin in Arabidopsis. Liebthal M, et al. Antioxidants (Basel), 2020 Jun 11. PMID 32545358, Free PMC Article
    3. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
    4. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787
    5. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_106155.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within translation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in mitochondrion HDA PubMed 
    part_of plastid small ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribosomal protein S9
    NP_177635.1
    • ribosomal protein S9 (RPS9); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S9 (InterPro:IPR000754), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S9, conserved site (InterPro:IPR020574); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT3G49080.1); Has 7998 Blast hits to 7997 proteins in 2816 species: Archae - 205; Bacteria - 5347; Metazoa - 103; Fungi - 127; Plants - 149; Viruses - 0; Other Eukaryotes - 2067 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28157386..28159317 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106155.4 → NP_177635.1  ribosomal protein S9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177635.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XJ27
      UniProtKB/TrEMBL
      A0A178WH00, A0A384LEA2, Q681V1, Q681W6
      Conserved Domains (1) summary
      CHL00079
      Location:81 → 208
      rps9; ribosomal protein S9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XJ27.1

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