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    TIFY10B TIFY domain/Divergent CCT motif family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843834, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TIFY10B
    Official Full Name
    TIFY domain/Divergent CCT motif family protein
    Primary source
    TAIR:AT1G74950
    Locus tag
    AT1G74950
    See related
    Araport:AT1G74950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25A4.8; F25A4_8; JASMONATE-ZIM-DOMAIN PROTEIN 2; JAZ2
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    Genomic context

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    See TIFY10B in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (28148574..28150446, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene cyclin-dependent kinase, putative (DUF581) Neighboring gene fatty acid biosynthesis 1 Neighboring gene ribosomal protein S9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. JAZ2 controls stomata dynamics during bacterial invasion. Gimenez-Ibanez S, et al. New Phytol, 2017 Feb. PMID 28005270
    2. The Arabidopsis JAZ2 promoter contains a G-Box and thymidine-rich module that are necessary and sufficient for jasmonate-dependent activation by MYC transcription factors and repression by JAZ proteins. Figueroa P, et al. Plant Cell Physiol, 2012 Feb. PMID 22173100
    3. Molecular reprogramming of Arabidopsis in response to perturbation of jasmonate signaling. Yan H, et al. J Proteome Res, 2014 Dec 5. PMID 25311705
    4. Alternative splicing expands the repertoire of dominant JAZ repressors of jasmonate signaling. Chung HS, et al. Plant J, 2010 Aug. PMID 20525008, Free PMC Article
    5. Change of a conserved amino acid in the MYC2 and MYC3 transcription factors leads to release of JAZ repression and increased activity. Goossens J, et al. New Phytol, 2015 Jun. PMID 25817565

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis jaz2 mutants are partially impaired in pathogen-induced stomatal closing and more susceptible to Pseudomonas.
      Title: JAZ2 controls stomata dynamics during bacterial invasion.
    2. Data indicate increases in glucose levels in jasmonate ZIM-domain (JAZ) proteins jaz2 and jaz7 mutations.
      Title: Molecular reprogramming of Arabidopsis in response to perturbation of jasmonate signaling.
    3. A thymidine-rich sequence and the G-box is required for JAZ2 promoter activity in Arabidopsis seedlings. The JAZ2 promoter is activated by Arabidopsis MYC2, MYC3, MYC4 and MYC5/bHLH028 transcription factors and repressed by JAZ proteins.
      Title: The Arabidopsis JAZ2 promoter contains a G-Box and thymidine-rich module that are necessary and sufficient for jasmonate-dependent activation by MYC transcription factors and repression by JAZ proteins.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_106153.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to jasmonic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TIFY domain/Divergent CCT motif family protein
    NP_565096.1
    • TIFY10B; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 1 (TAIR:AT1G19180.1); Has 432 Blast hits to 427 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 432; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28148574..28150446 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334673.1 → NP_001322261.1  TIFY domain/Divergent CCT motif family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ATF8, A0A5S9WUH0

    2. NM_106153.4 → NP_565096.1  TIFY domain/Divergent CCT motif family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565096.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LBU1, Q9S7M2
      UniProtKB/TrEMBL
      A0A178WA69, A0A5S9WUH0
      Conserved Domains (2) summary
      pfam06200
      Location:114 → 147
      tify; tify domain
      pfam09425
      Location:204 → 228
      CCT_2; Divergent CCT motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9S7M2.1

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