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    cyclin-dependent kinase, putative (DUF581) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843833, updated on 18-Sep-2024

    Summary

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    Official Full Name
    cyclin-dependent kinase, putative (DUF581)
    Primary source
    TAIR:AT1G74940
    Locus tag
    AT1G74940
    See related
    Araport:AT1G74940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25A4.9; F25A4_9
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (28145978..28147485)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene aldehyde dehydrogenase 10A8 Neighboring gene uncharacterized protein Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene TIFY domain/Divergent CCT motif family protein Neighboring gene fatty acid biosynthesis 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FLZ13 interacts with FLC and ABI5 to negatively regulate flowering time in Arabidopsis. Li X, et al. New Phytol, 2024 Feb. PMID 38053494
    2. Expression of Arabidopsis FCS-Like Zinc finger genes is differentially regulated by sugars, cellular energy level, and abiotic stress. Jamsheer K M, et al. Front Plant Sci, 2015. PMID 26442059, Free PMC Article
    3. The complex becomes more complex: protein-protein interactions of SnRK1 with DUF581 family proteins provide a framework for cell- and stimulus type-specific SnRK1 signaling in plants. Nietzsche M, et al. Front Plant Sci, 2014. PMID 24600465, Free PMC Article
    4. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
    5. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. FLZ13 interacts with FLC and ABI5 to negatively regulate flowering time in Arabidopsis.
      Title: FLZ13 interacts with FLC and ABI5 to negatively regulate flowering time in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_106152.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables kinase binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    involved_in response to salt IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclin-dependent kinase, putative (DUF581)
    NP_565095.1
    • Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT1G19200.1); Has 483 Blast hits to 483 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 483; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28145978..28147485
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106152.4 → NP_565095.1  cyclin-dependent kinase, putative (DUF581) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565095.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GRN0, Q8LCV5, Q9CB02, Q9S7C1, Q9S817
      UniProtKB/TrEMBL
      A0A178WDP7
      Conserved Domains (1) summary
      pfam04570
      Location:140 → 190
      zf-FLZ; zinc-finger of the FCS-type, C2-C2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GRN0.1

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