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    ubiquitin system component Cue [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844344, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ubiquitin system component Cue
    Primary source
    TAIR:AT1G80040
    Locus tag
    AT1G80040
    See related
    Araport:AT1G80040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18B13.13; F18B13_13
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (30109059..30111284, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene FAR1-related sequence 8 Neighboring gene pseudo Neighboring gene Molecular chaperone Hsp40/DnaJ family protein Neighboring gene adenine phosphoribosyl transferase 2 Neighboring gene Ubiquitin-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001334949.1
    NM_001334950.1
    NM_106653.3
    NM_202459.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin system component Cue
    NP_001319423.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.1).
    NP_565228.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974188.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30109059..30111284 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106653.3 → NP_565228.1  ubiquitin system component Cue [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565228.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WCP7, A0A5S9WVY2, A0A654EQL1, Q9SSD3
      Conserved Domains (1) summary
      cd14279
      Location:44 → 77
      CUE; CUE domain found in ubiquitin-binding CUE proteins

    2. NM_001334950.1 → NP_001320896.1  ubiquitin system component Cue [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AP84

    3. NM_001334949.1 → NP_001319423.1  ubiquitin system component Cue [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HQF8

    4. NM_202459.1 → NP_974188.1  ubiquitin system component Cue [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974188.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HQF9
      Conserved Domains (1) summary
      cd14279
      Location:44 → 77
      CUE; CUE domain found in ubiquitin-binding CUE proteins
    Nucleotide Protein
    Heading Accession and Version

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