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    Serine/Threonine kinase family catalytic domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838420, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Serine/Threonine kinase family catalytic domain protein
    Primary source
    TAIR:AT1G18390
    Locus tag
    AT1G18390
    See related
    Araport:AT1G18390
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15H18.25; F15H18_25
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (6325536..6330179)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene MAP kinase kinase 7 Neighboring gene ATP binding microtubule motor family protein Neighboring gene ncRNA Neighboring gene BR enhanced expression 1 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The AtLRK10L1.2, Arabidopsis ortholog of wheat LRK10, is involved in ABA-mediated signaling and drought resistance. Lim CW, et al. Plant Cell Rep, 2015 Mar. PMID 25533478
    2. Alternative splicing of mini-exons in the Arabidopsis leaf rust receptor-like kinase LRK10 genes affects subcellular localisation. Shin KH, et al. Plant Cell Rep, 2015 Mar. PMID 25510357
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LRK10L1.2 is involved in abscisic acid-mediated signaling and drought resistance.[LRK10L1]
      Title: The AtLRK10L1.2, Arabidopsis ortholog of wheat LRK10, is involved in ABA-mediated signaling and drought resistance.
    2. Alternative splicing affects differential localization of AtLRK10L1.2 protein variants.
      Title: Alternative splicing of mini-exons in the Arabidopsis leaf rust receptor-like kinase LRK10 genes affects subcellular localisation.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001160877.1
    NM_101697.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables polysaccharide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    acts_upstream_of_or_within cellular response to abscisic acid stimulus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular response to water deprivation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within photoperiodism, flowering IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Serine/Threonine kinase family catalytic domain protein
    NP_001154349.1
    • Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G66880.1); Has 128125 Blast hits to 126473 proteins in 4812 species: Archae - 110; Bacteria - 14433; Metazoa - 47787; Fungi - 10757; Plants - 35416; Viruses - 568; Other Eukaryotes - 19054 (source: NCBI BLink).
    NP_173275.4
    • Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G66880.1); Has 21064 Blast hits to 20752 proteins in 1151 species: Archae - 24; Bacteria - 3918; Metazoa - 5271; Fungi - 1719; Plants - 7999; Viruses - 19; Other Eukaryotes - 2114 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6325536..6330179
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101697.6 → NP_173275.4  Serine/Threonine kinase family catalytic domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173275.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9V131
      Conserved Domains (3) summary
      smart00219
      Location:341 → 610
      TyrKc; Tyrosine kinase, catalytic domain
      pfam14380
      Location:150 → 237
      WAK_assoc; Wall-associated receptor kinase C-terminal
      cl21453
      Location:344 → 613
      PKc_like; Protein Kinases, catalytic domain

    2. NM_001160877.1 → NP_001154349.1  Serine/Threonine kinase family catalytic domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154349.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IAQ9, P0C5E2, Q5BQ05, Q5Q0G6, Q8RX30
      UniProtKB/TrEMBL
      A0A178WH09
      Conserved Domains (3) summary
      smart00219
      Location:347 → 616
      TyrKc; Tyrosine kinase, catalytic domain
      pfam14380
      Location:180 → 243
      WAK_assoc; Wall-associated receptor kinase C-terminal
      cl21453
      Location:350 → 619
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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