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    TRFL3 TRF-like 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838319, updated on 18-Sep-2024

    Summary

    Official Symbol
    TRFL3
    Official Full Name
    TRF-like 3
    Primary source
    TAIR:AT1G17460
    Locus tag
    AT1G17460
    See related
    Araport:AT1G17460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28G4.5; TRF-like 3
    Summary
    Arabidopsis thaliana myb family transcription factor (At1g17460)
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    Genomic context

    See TRFL3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (5998765..6002732)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene B-block binding subunit of TFIIIC Neighboring gene ELF4-like 4 Neighboring gene developmentally regulated G-protein 1 Neighboring gene IQ-domain 7 Neighboring gene epidermal patterning factor-like protein

    Interactions

    General gene information

    NM_001198094.1
    NM_001332306.1
    NM_101608.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytosolic ribosome PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    TRF-like 3
    NP_001185023.1
    • TRF-like 3 (TRFL3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 6 (TAIR:AT1G72650.2).
    NP_564025.2
    • TRF-like 3 (TRFL3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 6 (TAIR:AT1G72650.2); Has 797 Blast hits to 787 proteins in 122 species: Archae - 0; Bacteria - 2; Metazoa - 159; Fungi - 55; Plants - 510; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5998765..6002732
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101608.5NP_564025.2  TRF-like 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564025.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9UX25, A0A654ELG2, Q8RXU8
      Conserved Domains (2) summary
      smart00717
      Location:497547
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd11660
      Location:497547
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    2. NM_001332306.1NP_001321911.1  TRF-like 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W821, A0A1P8ASC6, A0A5S9UX25, A0A654ELG2
    3. NM_001198094.1NP_001185023.1  TRF-like 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185023.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9UX25, A0A654ELG2, F4I7K3
      Conserved Domains (2) summary
      smart00717
      Location:517567
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd11660
      Location:517567
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
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