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    GAT1_2.1 Class I glutamine amidotransferase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838069, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GAT1_2.1
    Official Full Name
    Class I glutamine amidotransferase-like superfamily protein
    Primary source
    TAIR:AT1G15040
    Locus tag
    AT1G15040
    See related
    Araport:AT1G15040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    GAT; glutamine amidotransferase; glutamine amidotransferase 1_2.1; T15D22.12; T15D22_12
    Summary
    Encodes a nitrogen regulated putative glutamine amidotransferase that represses shoot branching.
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    Genomic context

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    See GAT1_2.1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (5179887..5181402, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box family protein Neighboring gene quiescin-sulfhydryl oxidase 1 Neighboring gene hypothetical protein (DUF789) Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene indole-3-acetic acid inducible 34 Neighboring gene alpha/beta hydrolase family protein Neighboring gene lipid phosphate phosphatase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A nitrogen-regulated glutamine amidotransferase (GAT1_2.1) represses shoot branching in Arabidopsis. Zhu H, et al. Plant Physiol, 2012 Dec. PMID 22885937, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_101374.3
    NM_180612.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of secondary shoot formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Class I glutamine amidotransferase-like superfamily protein
    NP_172958.2
    • Class I glutamine amidotransferase-like superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: glutamine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Peptidase C26 (InterPro:IPR011697), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT1G66860.1); Has 3653 Blast hits to 3649 proteins in 1189 species: Archae - 28; Bacteria - 2899; Metazoa - 3; Fungi - 7; Plants - 51; Viruses - 0; Other Eukaryotes - 665 (source: NCBI BLink).
    NP_850943.1
    • Class I glutamine amidotransferase-like superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: glutamine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Peptidase C26 (InterPro:IPR011697), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT1G66860.1); Has 3704 Blast hits to 3700 proteins in 1207 species: Archae - 28; Bacteria - 2948; Metazoa - 3; Fungi - 7; Plants - 53; Viruses - 0; Other Eukaryotes - 665 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5179887..5181402 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180612.4 → NP_850943.1  Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850943.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H0Z4, Q9M9Q1
      UniProtKB/TrEMBL
      A0A5S9UJS1, A0A654EF60
      Conserved Domains (1) summary
      cd01745
      Location:15 → 250
      GATase1_2; Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

    2. NM_101374.3 → NP_172958.2  Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172958.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H0Z4
      Conserved Domains (1) summary
      cd01745
      Location:15 → 250
      GATase1_2; Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H0Z4.1

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