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    RNA-binding (RRM/RBD/RNP motifs) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838341, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Primary source
    TAIR:AT1G17640
    Locus tag
    AT1G17640
    See related
    Araport:AT1G17640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11A6.17
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (6067086..6069392, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Disease resistance protein (TIR-NBS class) Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene glyoxylate reductase 2 Neighboring gene CA-responsive protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001332316.1
    NM_001332317.1
    NM_101627.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding (RRM/RBD/RNP motifs) family protein
    NP_001319031.1
    • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G13224.2); Has 513802 Blast hits to 488537 proteins in 21806 species: Archae - 10521; Bacteria - 302893; Metazoa - 102492; Fungi - 14718; Plants - 34458; Viruses - 34904; Other Eukaryotes - 13816 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6067086..6069392 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332316.1 → NP_001319031.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WDR7, A0A654EC88, A0A7G2DRC9, F4I906
      Conserved Domains (1) summary
      cl17169
      Location:158 → 236
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. NM_001332317.1 → NP_001320299.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WDR7, A0A654EC88, A0A7G2DRC9, F4I906
      Conserved Domains (1) summary
      cl17169
      Location:158 → 236
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. NM_101627.2 → NP_173208.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173208.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WDR7, A0A654EC88, A0A7G2DRC9, F4I906
      Conserved Domains (1) summary
      cl17169
      Location:158 → 236
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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