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    TOM2B tobamovirus multiplication 2B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840129, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TOM2B
    Official Full Name
    tobamovirus multiplication 2B
    Primary source
    TAIR:AT1G32370
    Locus tag
    AT1G32370
    See related
    Araport:AT1G32370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5D14.14; F5D14_14; tobamovirus multiplication 2B; TTM1
    Summary
    Encodes a 122 amino acid basic protein involved in tobamovirus multiplication in planta.
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    Genomic context

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    See TOM2B in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (11676925..11678692)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Zinc finger (CCCH-type) family protein Neighboring gene RING/U-box superfamily protein Neighboring gene ncRNA Neighboring gene F-box/RNI-like/FBD-like domains-containing protein Neighboring gene phosphoribosyl pyrophosphate (PRPP) synthase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036049.2
    NM_102970.3
    NM_179409.3
    NM_202222.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    tobamovirus multiplication 2B
    NP_001031126.1
    • tobamovirus multiplication 2B (TOM2B); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_564397.1
    • tobamovirus multiplication 2B (TOM2B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: viral replication complex formation and maintenance; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_849740.1
    • tobamovirus multiplication 2B (TOM2B); Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_973951.1
    • tobamovirus multiplication 2B (TOM2B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: viral replication complex formation and maintenance; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11676925..11678692
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179409.3 → NP_849740.1  tobamovirus multiplication 2B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849740.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4ICP0, Q682B7, Q8H960, Q8L9F1
      UniProtKB/TrEMBL
      A0A178WN10, A0A5S9WKU0, A0A654EGD3

    2. NM_202222.3 → NP_973951.1  tobamovirus multiplication 2B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973951.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WKU0, A0A654EGD3

    3. NM_102970.3 → NP_564397.1  tobamovirus multiplication 2B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564397.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WKU0, A0A654EGD3

    4. NM_001036049.2 → NP_001031126.1  tobamovirus multiplication 2B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031126.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WKU0, A0A654EGD3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H960.2

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