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    Kelch repeat-containing F-box family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841580, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Kelch repeat-containing F-box family protein
    Primary source
    TAIR:AT1G51550
    Locus tag
    AT1G51550
    See related
    Araport:AT1G51550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5D21.4; F5D21_4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (19117032..19119382, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene Aminotransferase-like, plant mobile domain family protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene ncRNA Neighboring gene Pyridoxamine 5'-phosphate oxidase family protein Neighboring gene Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Protein degradation in signaling. Callis J, et al. Curr Opin Plant Biol, 2000 Oct. PMID 11019805
    2. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_104033.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Kelch repeat-containing F-box family protein
    NP_564592.1
    • Kelch repeat-containing F-box family protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: LOV KELCH protein 2 (TAIR:AT2G18915.1); Has 5347 Blast hits to 2769 proteins in 302 species: Archae - 18; Bacteria - 180; Metazoa - 1718; Fungi - 754; Plants - 1496; Viruses - 0; Other Eukaryotes - 1181 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19117032..19119382 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104033.6 → NP_564592.1  Kelch repeat-containing F-box family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564592.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q681W1, Q8LAD5, Q9C8K7
      UniProtKB/TrEMBL
      A0A178W9S1, A0A5S9WNJ3, A0A654EHK0
      Conserved Domains (4) summary
      PLN02193
      Location:246 → 437
      PLN02193; nitrile-specifier protein
      PHA03098
      Location:121 → 253
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:234 → 285
      Kelch; KELCH repeat [structural motif]
      pfam13418
      Location:288 → 324
      Kelch_4; Galactose oxidase, central domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C8K7.1

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