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    SHM7 serine hydroxymethyltransferase 7 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840543, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SHM7
    Official Full Name
    serine hydroxymethyltransferase 7
    Primary source
    TAIR:AT1G36370
    Locus tag
    AT1G36370
    See related
    Araport:AT1G36370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7F23.9; F7F23_9; serine hydroxymethyltransferase 7
    Summary
    Encodes a putative serine hydroxymethyltransferase.
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    Genomic context

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    See SHM7 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (13696042..13698739, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Arg Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene Co-chaperone GrpE family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nuclear Localised MORE SULPHUR ACCUMULATION1 Epigenetically Regulates Sulphur Homeostasis in Arabidopsis thaliana. Huang XY, et al. PLoS Genet, 2016 Sep. PMID 27622452, Free PMC Article
    2. Arabidopsis thaliana serine hydroxymethyltransferases: functions, structures, and perspectives. Nogués I, et al. Plant Physiol Biochem, 2022 Sep 15. PMID 35947902
    3. Proteome changes in Arabidopsis thaliana roots upon exposure to Cd2+. Roth U, et al. J Exp Bot, 2006. PMID 17075075
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    • At1g36370_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
    • At1g36370_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
    NM_103323.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycine hydroxymethyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within S-adenosylmethionine metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in glycine biosynthetic process from serine IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to cadmium ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within sulfate ion homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in tetrahydrofolate interconversion IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine hydroxymethyltransferase 7
    NP_564473.1
    • serine hydroxymethyltransferase 7 (SHM7); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: response to cadmium ion, glycine metabolic process, L-serine metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: serine hydroxymethyltransferase 6 (TAIR:AT1G22020.1); Has 11689 Blast hits to 11664 proteins in 2845 species: Archae - 258; Bacteria - 6485; Metazoa - 362; Fungi - 287; Plants - 350; Viruses - 6; Other Eukaryotes - 3941 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      13696042..13698739 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103323.3 → NP_564473.1  serine hydroxymethyltransferase 7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564473.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84WV0, Q8LFB5, Q9C8X6
      UniProtKB/TrEMBL
      A0A178WMF6, A0A5S9WJ23
      Conserved Domains (1) summary
      PLN02271
      Location:3 → 595
      PLN02271; serine hydroxymethyltransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84WV0.1

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