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    LINC3 little nuclei3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843210, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LINC3
    Official Full Name
    little nuclei3
    Primary source
    TAIR:AT1G68790
    Locus tag
    AT1G68790
    See related
    Araport:AT1G68790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CROWDED NUCLEI 3; CRWN3; F14K14.10; F14K14_10; LITTLE NUCLEI3
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    Genomic context

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    See LINC3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (25834686..25839541, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Putative membrane lipoprotein Neighboring gene RNI-like superfamily protein Neighboring gene CLAVATA3/ESR-RELATED 12 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Roles of CRWN-family proteins in protecting genomic DNA against oxidative damage. Wang Q, et al. J Plant Physiol, 2019 Feb. PMID 30576929
    2. The Arabidopsis CROWDED NUCLEI genes regulate seed germination by modulating degradation of ABI5 protein. Zhao W, et al. J Integr Plant Biol, 2016 Jul. PMID 26564029
    3. Arabidopsis CROWDED NUCLEI (CRWN) proteins are required for nuclear size control and heterochromatin organization. Wang H, et al. BMC Plant Biol, 2013 Dec 5. PMID 24308514, Free PMC Article
    4. LITTLE NUCLEI 1 and 4 regulate nuclear morphology in Arabidopsis thaliana. Sakamoto Y, et al. Plant Cell Physiol, 2013 Apr. PMID 23396599
    5. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. role in diminishing ROS accumulation and protecting genomic DNA against excessive oxidative damage caused by methyl methanesulfonate
      Title: Roles of CRWN-family proteins in protecting genomic DNA against oxidative damage.
    2. These results suggested important roles of CRWNs in ABI5 nuclear body organization and ABI5 protein degradation during seed germination.
      Title: The Arabidopsis CROWDED NUCLEI genes regulate seed germination by modulating degradation of ABI5 protein.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_105552.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in nucleus organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleolus HDA PubMed 
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    little nuclei3
    NP_177046.1
    • LITTLE NUCLEI3 (LINC3); INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nuclear matrix constituent protein-related (TAIR:AT1G13220.2); Has 314839 Blast hits to 141527 proteins in 3854 species: Archae - 3371; Bacteria - 67403; Metazoa - 125121; Fungi - 24709; Plants - 16322; Viruses - 1225; Other Eukaryotes - 76688 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25834686..25839541 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105552.3 → NP_177046.1  little nuclei3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177046.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9CA42
      UniProtKB/TrEMBL
      A0A178WGJ9, A0A5S9WR00
      Conserved Domains (1) summary
      PTZ00121
      Location:122 → 667
      PTZ00121; MAEBL; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CA42.1

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