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    Class II aaRS and biotin synthetases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843171, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Class II aaRS and biotin synthetases superfamily protein
    Primary source
    TAIR:AT1G68420
    Locus tag
    AT1G68420
    See related
    Araport:AT1G68420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T2E12.3; T2E12_3
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (25653893..25654156)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat transmembrane protein kinase family protein Neighboring gene ncRNA Neighboring gene Protein phosphatase 2C family protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in tRNA aminoacylation for protein translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Class II aaRS and biotin synthetases superfamily protein
    NP_177009.1
    • Class II aaRS and biotin synthetases superfamily protein; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein (TAIR:AT5G56680.1); Has 4271 Blast hits to 4271 proteins in 1777 species: Archae - 237; Bacteria - 2945; Metazoa - 224; Fungi - 266; Plants - 114; Viruses - 0; Other Eukaryotes - 485 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25653893..25654156
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105513.1 → NP_177009.1  Class II aaRS and biotin synthetases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177009.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WBI4, A0A5S9WQJ2, A0A654EM74, Q9M9C7
      Conserved Domains (1) summary
      PLN02221
      Location:1 → 77
      PLN02221; asparaginyl-tRNA synthetase
    Nucleotide Protein
    Heading Accession and Version

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