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    Pleckstrin homology (PH) domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844109, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pleckstrin homology (PH) domain superfamily protein
    Primary source
    TAIR:AT1G77730
    Locus tag
    AT1G77730
    See related
    Araport:AT1G77730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T32E8.6; T32E8_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (29214220..29215832)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene putative protein kinase 1 Neighboring gene phosphatidylinositol-4-phosphate 5-kinase 2 Neighboring gene Ribosomal protein S13/S18 family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Learning the lipid language of plant signalling. van Leeuwen W, et al. Trends Plant Sci, 2004 Aug. PMID 15358268
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphatidylinositol binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within signal transduction ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pleckstrin homology (PH) domain superfamily protein
    NP_177896.1
    • Pleckstrin homology (PH) domain superfamily protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: leaf whorl, sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1C (TAIR:AT4G08180.3); Has 729 Blast hits to 728 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 485; Fungi - 91; Plants - 115; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29214220..29215832
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106422.2 → NP_177896.1  Pleckstrin homology (PH) domain superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177896.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WCM7, Q9CA21
      Conserved Domains (2) summary
      pfam00169
      Location:56 → 179
      PH; PH domain
      cl17171
      Location:54 → 186
      PH-like; Pleckstrin homology-like domain
    Nucleotide Protein
    Heading Accession and Version

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