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    nucleic acid/nucleotide binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838729, updated on 18-Sep-2024

    Summary

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    Official Full Name
    nucleic acid/nucleotide binding protein
    Primary source
    TAIR:AT1G21320
    Locus tag
    AT1G21320
    See related
    Araport:AT1G21320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16F4.3; F16F4_3
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (7462327..7466164, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene extensin 3 Neighboring gene ncRNA Neighboring gene dual specificity kinase Neighboring gene VQ motif-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structural and functional analysis of VQ motif-containing proteins in Arabidopsis as interacting proteins of WRKY transcription factors. Cheng Y, et al. Plant Physiol, 2012 Jun. PMID 22535423, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001160882.2
    NM_001332492.1
    NM_001332493.1
    NM_001332494.1
    NM_101984.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nucleic acid/nucleotide binding protein
    NP_001154354.1
    • nucleotide binding;nucleic acid binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G76940.1); Has 568 Blast hits to 568 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 270; Fungi - 126; Plants - 140; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
    NP_173554.3
    • nucleotide binding;nucleic acid binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G21326.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7462327..7466164 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101984.4 → NP_173554.3  nucleic acid/nucleotide binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173554.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HWF8, F4HWF9, Q9LMP3
      UniProtKB/TrEMBL
      A0A5S9VEZ7
      Conserved Domains (2) summary
      pfam05678
      Location:65 → 88
      VQ; VQ motif
      cd21618
      Location:320 → 408
      RRM_AtNSRA_like; RNA recognition motif (RRM) found in Arabidopsis thaliana nuclear speckle RNA-binding protein A (AtNSRA) and similar protein

    2. NM_001332493.1 → NP_001320686.1  nucleic acid/nucleotide binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANM3, A0A5S9VEZ7

    3. NM_001332492.1 → NP_001320688.1  nucleic acid/nucleotide binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANM6

    4. NM_001160882.2 → NP_001154354.1  nucleic acid/nucleotide binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154354.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HWF9
      Conserved Domains (2) summary
      COG0724
      Location:141 → 226
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12420
      Location:155 → 237
      RRM_RBPMS_like; RNA recognition motif in RNA-binding protein with multiple splicing (RBP-MS)-like proteins

    5. NM_001332494.1 → NP_001320687.1  nucleic acid/nucleotide binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANN1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4HWF9.1

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