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    Photosystem II reaction center PsbP family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819705, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Photosystem II reaction center PsbP family protein
    Primary source
    TAIR:AT3G05410
    Locus tag
    AT3G05410
    See related
    Araport:AT3G05410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22F7.15; F22F7_15
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (1554673..1561535)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ALWAYS EARLY 2 Neighboring gene S-adenosyl-L-methionine-dependent methyltransferase Neighboring gene Major facilitator superfamily protein Neighboring gene pseudo Neighboring gene acyl-CoA binding protein 4 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the Free and Membrane-Associated Fractions of the Thylakoid Lumen Proteome in Arabidopsis thaliana. Gollan PJ, et al. Int J Mol Sci, 2021 Jul 29. PMID 34360890, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001161120.2
    NM_001337583.1
    NM_111414.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in photosynthesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid lumen IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extrinsic component of membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of photosystem II oxygen evolving complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Photosystem II reaction center PsbP family protein
    NP_001154592.1
    • Photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: oxygen evolving complex, extrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PsbP-like protein 1 (TAIR:AT3G55330.1); Has 355 Blast hits to 355 proteins in 83 species: Archae - 0; Bacteria - 114; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
    NP_187192.1
    • Photosystem II reaction center PsbP family protein; Has 43 Blast hits to 43 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1554673..1561535
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001161120.2 → NP_001154592.1  Photosystem II reaction center PsbP family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154592.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J7A7, Q9MA54
      UniProtKB/TrEMBL
      A0A5S9X9B8, A0A654F4E0
      Conserved Domains (1) summary
      pfam01789
      Location:94 → 278
      PsbP

    2. NM_001337583.1 → NP_001326810.1  Photosystem II reaction center PsbP family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQE7

    3. NM_111414.2 → NP_187192.1  Photosystem II reaction center PsbP family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187192.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J7A7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4J7A7.1

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