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    TPR10 ankyrin repeat family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819629, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TPR10
    Official Full Name
    ankyrin repeat family protein
    Primary source
    TAIR:AT3G04710
    Locus tag
    AT3G04710
    See related
    Araport:AT3G04710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7O18.18; F7O18_18; tetratricopeptide repeat 10
    Summary
    Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with potential to interact with Hsp90/Hsp70 as co-chaperones.
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    Genomic context

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    See TPR10 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    15
    Sequence:
    Chromosome: 3; NC_003074.8 (1276668..1281170)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene WRKY DNA-binding protein 39 Neighboring gene CLP-similar protein 3 Neighboring gene Malectin/receptor-like protein kinase family protein Neighboring gene carboxylate clamp-TPR protein (DUF1685) Neighboring gene miscRNA Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001035558.1
    NM_111343.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    ankyrin repeat family protein
    NP_001030635.1
    • ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Ankyrin repeat-containing domain (InterPro:IPR020683), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT4G12400.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001189808.1
    • ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Tetratricopeptide-like helical (InterPro:IPR011990), Ankyrin repeat-containing domain (InterPro:IPR020683), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT3G04700.1).
    NP_187122.1
    • ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Ankyrin repeat-containing domain (InterPro:IPR020683), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT4G12400.2); Has 102393 Blast hits to 40007 proteins in 1636 species: Archae - 288; Bacteria - 12620; Metazoa - 45538; Fungi - 10843; Plants - 6349; Viruses - 1271; Other Eukaryotes - 25484 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1276668..1281170
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202879.1 → NP_001189808.1  ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189808.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X920, F4J4V1
      Conserved Domains (7) summary
      cd00204
      Location:307 → 431
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00006
      Location:585 → 615
      TPR; TPR repeat [structural motif]
      pfam07939
      Location:82 → 125
      DUF1685; Protein of unknown function (DUF1685)
      pfam12796
      Location:317 → 407
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:313 → 343
      ANK; ANK repeat [structural motif]
      cl02529
      Location:245 → 299
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      cl03759
      Location:202 → 264
      Alpha_adaptinC2; Adaptin C-terminal domain

    2. NM_111343.3 → NP_187122.1  ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187122.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VF97, A0A384LG13, Q9SR03
      Conserved Domains (5) summary
      PHA02875
      Location:54 → 265
      PHA02875; ankyrin repeat protein; Provisional
      PLN03088
      Location:334 → 428
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      sd00006
      Location:361 → 391
      TPR; TPR repeat [structural motif]
      sd00045
      Location:89 → 119
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:93 → 182
      Ank_2; Ankyrin repeats (3 copies)

    3. NM_001035558.1 → NP_001030635.1  ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030635.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J4V4
      Conserved Domains (4) summary
      cd00204
      Location:83 → 207
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00006
      Location:360 → 390
      TPR; TPR repeat [structural motif]
      pfam12796
      Location:93 → 183
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:89 → 119
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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