MD-2-related lipid recognition domain-containing protein / ML domain-containing protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: MD-2-related lipid recognition domain-containing protein / ML domain-containing protein
Primary source: TAIR:AT3G11780
Locus tag: AT3G11780
See related: Araport:AT3G11780
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 5

Sequence:: Chromosome: 3; NC_003074.8 (3723894..3725618, complement)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Homology

Orthologs from OrthoDB

NM_001202933.1

Supported by ESTs:

NM_112011.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables sterol binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in intracellular sterol transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in extracellular region	ISM Inferred from Sequence Model more info
located_in plant-type vacuole	HDA more info	PubMed
located_in secretory vesicle	HDA more info	PubMed

General protein information

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Preferred Names: MD-2-related lipid recognition domain-containing protein / ML domain-containing protein

NP_001189862.1

MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; CONTAINS InterPro DOMAIN/s: MD-2-related lipid-recognition (InterPro:IPR003172), Protein of unknown function DUF907, fungi (InterPro:IPR010308); BEST Arabidopsis thaliana protein match is: Immunoglobulin E-set superfamily protein (TAIR:AT5G06480.1).

NP_566400.1

MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: Immunoglobulin E-set superfamily protein (TAIR:AT5G06480.1); Has 235 Blast hits to 235 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 114; Plants - 95; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

3723894..3725618 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_112011.4 → NP_566400.1 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_566400.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A654FGN6, Q8LCT1, Q9SF20

Conserved Domains (1) summary

cd00917
Location:27 → 142

PG-PI_TP; The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
NM_001202933.1 → NP_001189862.1 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001189862.1

Status: REVIEWED

UniProtKB/TrEMBL

F4J7G5, Q8LCT1

Conserved Domains (1) summary

cd00917
Location:27 → 160

PG-PI_TP; The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.