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    ZIP metal ion transporter family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820012, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ZIP metal ion transporter family
    Primary source
    TAIR:AT3G08650
    Locus tag
    AT3G08650
    See related
    Araport:AT3G08650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (2624385..2627455, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene alphavirus core family protein (DUF3411) Neighboring gene Phototropic-responsive NPH3 family protein Neighboring gene serine/arginine repetitive matrix-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_111699.6
    NM_202527.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables metal ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within metal ion transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within monoatomic cation transmembrane transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ZIP metal ion transporter family
    NP_187477.1
    • ZIP metal ion transporter family; FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: transmembrane transport, metal ion transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP metal ion transporter family (TAIR:AT3G20870.1); Has 4142 Blast hits to 3425 proteins in 1059 species: Archae - 130; Bacteria - 2604; Metazoa - 766; Fungi - 8; Plants - 161; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink).
    NP_974256.1
    • ZIP metal ion transporter family; FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport, transmembrane transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP metal ion transporter family (TAIR:AT3G20870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2624385..2627455 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111699.6 → NP_187477.1  ZIP metal ion transporter family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187477.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VKM2, A0A5S9XA80
      Conserved Domains (2) summary
      COG0428
      Location:74 → 291
      ZupT; Zinc transporter ZupT [Inorganic ion transport and metabolism]
      cl00437
      Location:439 → 576
      Zip; ZIP Zinc transporter

    2. NM_202527.1 → NP_974256.1  ZIP metal ion transporter family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974256.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L600, Q9C9Z1
      UniProtKB/TrEMBL
      A0A5S9XA80
      Conserved Domains (2) summary
      COG0428
      Location:98 → 315
      ZupT; Zinc transporter ZupT [Inorganic ion transport and metabolism]
      cl00437
      Location:463 → 600
      Zip; ZIP Zinc transporter
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C9Z1.2

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