U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Dynein light chain type 1 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820857, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Dynein light chain type 1 family protein
    Primary source
    TAIR:AT3G16120
    Locus tag
    AT3G16120
    See related
    Araport:AT3G16120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (5464728..5465585)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RAB GTPase homolog G3C Neighboring gene PDI-like 1-6 Neighboring gene uncharacterized protein Neighboring gene RHO guanyl-nucleotide exchange factor 13 Neighboring gene photosystem I subunit H-1 Neighboring gene N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001338208.1
    NM_112482.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in microtubule-based process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Dynein light chain type 1 family protein
    NP_188233.1
    • Dynein light chain type 1 family protein; FUNCTIONS IN: microtubule motor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1/2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 11 (TAIR:AT1G52240.2); Has 1266 Blast hits to 1264 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 664; Fungi - 103; Plants - 251; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5464728..5465585
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112482.3 → NP_188233.1  Dynein light chain type 1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188233.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VDE1, A0A384KD02, A0A7G2EQN5, Q9LW74
      Conserved Domains (1) summary
      pfam01221
      Location:5 → 89
      Dynein_light; Dynein light chain type 1

    2. NM_001338208.1 → NP_001325583.1  Dynein light chain type 1 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VDE1, A0A384KD02, A0A7G2EQN5, Q9LW74
      Conserved Domains (1) summary
      pfam01221
      Location:5 → 89
      Dynein_light; Dynein light chain type 1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools