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    bacterial hemolysin-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822131, updated on 18-Sep-2024

    Summary

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    Official Full Name
    bacterial hemolysin-like protein
    Primary source
    TAIR:AT3G25470
    Locus tag
    AT3G25470
    See related
    Araport:AT3G25470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (9232821..9235215)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene Rhodanese/Cell cycle control phosphatase superfamily protein Neighboring gene pseudo Neighboring gene Protein kinase family protein Neighboring gene formin-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_113443.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    bacterial hemolysin-like protein
    NP_566765.1
    • bacterial hemolysin-related; FUNCTIONS IN: methyltransferase activity, RNA binding, nucleic acid binding; INVOLVED IN: methylation, hemolysis by symbiont of host erythrocytes; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding S4 (InterPro:IPR002942), Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877), Haemolysin A (InterPro:IPR004538); Has 3788 Blast hits to 3763 proteins in 1590 species: Archae - 10; Bacteria - 3068; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 663 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9232821..9235215
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113443.4 → NP_566765.1  bacterial hemolysin-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566765.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJ11, A0A384L9D1, A0A654FBI1, Q9LSV5
      Conserved Domains (1) summary
      COG1189
      Location:53 → 292
      YqxC; Predicted rRNA methylase YqxC, contains S4 and FtsJ domains [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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