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    ATL5 ribosomal protein L5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822138, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATL5
    Official Full Name
    ribosomal protein L5
    Primary source
    TAIR:AT3G25520
    Locus tag
    AT3G25520
    See related
    Araport:AT3G25520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    OLI5; OLIGOCELLULA 5; PGY3; PIGGYBACK3; ribosomal protein L5; RIBOSOMAL PROTEIN L5; RIBOSOMAL PROTEIN L5 A; RPL5A
    Summary
    Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.
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    Genomic context

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    See ATL5 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (9269277..9271465, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene TIR-NBS-LRR class disease resistance protein Neighboring gene disease resistance protein (TIR-NBS-LRR class) family protein Neighboring gene glyoxylate reductase 1 Neighboring gene TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of transcription factor IIIA and ribosomal protein L5 from Arabidopsis thaliana. Mathieu O, et al. Nucleic Acids Res, 2003 May 1. PMID 12711688, Free PMC Article
    2. Ribosomal protein L5 and transcription factor IIIA from Arabidopsis thaliana bind in vitro specifically Potato spindle tuber viroid RNA. Eiras M, et al. Arch Virol, 2011 Mar. PMID 21153748
    3. Three PIGGYBACK genes that specifically influence leaf patterning encode ribosomal proteins. Pinon V, et al. Development, 2008 Apr. PMID 18305008
    4. Coordination of cell proliferation and cell expansion mediated by ribosome-related processes in the leaves of Arabidopsis thaliana. Fujikura U, et al. Plant J, 2009 Aug. PMID 19392710
    5. Ribosomal proteins promote leaf adaxial identity. Yao Y, et al. Development, 2008 Apr. PMID 18305007

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203041.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 5S rRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables 5S rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within adaxial/abaxial pattern specification IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in adaxial/abaxial pattern specification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cell division IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in leaf morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within nucleocytoplasmic transport TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within root morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    NOT located_in Golgi apparatus RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in chloroplast HDA PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    part_of cytosolic large ribosomal subunit HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    ribosomal protein L5
    NP_001189970.1
    • ribosomal protein L5 (ATL5); CONTAINS InterPro DOMAIN/s: Ribosomal protein L5, eukaryotic (InterPro:IPR005485), Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: ribosomal protein L5 B (TAIR:AT5G39740.2).
    NP_566767.1
    • ribosomal protein L5 (ATL5); FUNCTIONS IN: structural constituent of ribosome, 5S rRNA binding; INVOLVED IN: in 7 processes; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5, eukaryotic (InterPro:IPR005485), Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: ribosomal protein L5 B (TAIR:AT5G39740.2); Has 1450 Blast hits to 1449 proteins in 545 species: Archae - 345; Bacteria - 5; Metazoa - 620; Fungi - 157; Plants - 121; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9269277..9271465 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113448.5 → NP_566767.1  ribosomal protein L5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566767.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DHP6, Q8LBI1, Q940R7
      UniProtKB/TrEMBL
      A0A178V891, A0A654FBV7
      Conserved Domains (1) summary
      PTZ00069
      Location:1 → 286
      PTZ00069; 60S ribosomal protein L5; Provisional

    2. NM_001338753.1 → NP_001327862.1  ribosomal protein L5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DHP6, Q8LBI1, Q940R7
      UniProtKB/TrEMBL
      A0A178V891, A0A654FBV7
      Conserved Domains (1) summary
      PTZ00069
      Location:1 → 286
      PTZ00069; 60S ribosomal protein L5; Provisional

    3. NM_001203041.1 → NP_001189970.1  ribosomal protein L5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189970.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J912
      Conserved Domains (2) summary
      pfam14204
      Location:80 → 175
      Ribosomal_L18_c; Ribosomal L18 C-terminal region
      cl00379
      Location:32 → 61
      Ribosomal_L18_L5e; Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LBI1.2

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