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    vacuolar sorting-associated protein (DUF946) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821296, updated on 18-Sep-2024

    Summary

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    Official Full Name
    vacuolar sorting-associated protein (DUF946)
    Primary source
    TAIR:AT3G01880
    Locus tag
    AT3G01880
    See related
    Araport:AT3G01880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1C9.34
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (307782..309560)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene hypothetical protein (DUF946) Neighboring gene SWIB/MDM2 domain superfamily protein Neighboring gene cytochrome P450, family 94, subfamily B, polypeptide 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_111054.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    vacuolar sorting-associated protein (DUF946)
    NP_186837.1
    • Plant protein of unknown function (DUF946); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT3G01870.1); Has 287 Blast hits to 285 proteins in 76 species: Archae - 0; Bacteria - 16; Metazoa - 29; Fungi - 107; Plants - 134; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      307782..309560
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111054.2 → NP_186837.1  vacuolar sorting-associated protein (DUF946) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186837.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VGC0, Q9S7Q5
      Conserved Domains (1) summary
      pfam06101
      Location:59 → 589
      Vps62; Vacuolar protein sorting-associated protein 62
    Nucleotide Protein
    Heading Accession and Version

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