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    PLATZ transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840898, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PLATZ transcription factor family protein
    Primary source
    TAIR:AT1G43000
    Locus tag
    AT1G43000
    See related
    Araport:AT1G43000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13A11.6; F13A11_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (16140526..16141792)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Actin-binding FH2 (formin homology 2) family protein Neighboring gene basic region/leucine zipper motif 60 Neighboring gene F-box/associated interaction domain protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_103459.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PLATZ transcription factor family protein
    NP_174999.1
    • PLATZ transcription factor family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT1G21000.1); Has 398 Blast hits to 398 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 398; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      16140526..16141792
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333205.1 → NP_001322543.1  PLATZ transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VZV5, A0A1P8AUB3, A0A384KFQ5, A0A5S9WM99
      Conserved Domains (1) summary
      pfam04640
      Location:71 → 142
      PLATZ; PLATZ transcription factor

    2. NM_103459.2 → NP_174999.1  PLATZ transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174999.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WM99, Q9C7R9
      Conserved Domains (1) summary
      pfam04640
      Location:64 → 135
      PLATZ; PLATZ transcription factor
    Nucleotide Protein
    Heading Accession and Version

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