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    TBL22 TRICHOME BIREFRINGENCE-LIKE 22 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822439, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TBL22
    Official Full Name
    TRICHOME BIREFRINGENCE-LIKE 22
    Primary source
    TAIR:AT3G28150
    Locus tag
    AT3G28150
    See related
    Araport:AT3G28150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ALTERED XYLOGLUCAN 4-LIKE; AXY4L; TRICHOME BIREFRINGENCE-LIKE 22
    Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. A putative xyloglucan O-acetyltransferase. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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    Genomic context

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    See TBL22 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (10471842..10473952, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene RNA ligase/cyclic nucleotide phosphodiesterase family protein Neighboring gene miscRNA Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. O-acetylation of Arabidopsis hemicellulose xyloglucan requires AXY4 or AXY4L, proteins with a TBL and DUF231 domain. Gille S, et al. Plant Cell, 2011 Nov. PMID 22086088, Free PMC Article
    2. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. O-acetylation of Arabidopsis hemicellulose xyloglucan requires AXY4 or AXY4L
      Title: O-acetylation of Arabidopsis hemicellulose xyloglucan requires AXY4 or AXY4L, proteins with a TBL and DUF231 domain.
    Submit: New GeneRIF Correction

    General gene information

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    NM_113733.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within xyloglucan metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 

    General protein information

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    Preferred Names
    TRICHOME BIREFRINGENCE-LIKE 22
    NP_189454.1
    • TRICHOME BIREFRINGENCE-LIKE 22 (TBL22); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 19 (TAIR:AT5G15900.1); Has 1337 Blast hits to 1308 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1337; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10471842..10473952 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113733.6 → NP_189454.1  TRICHOME BIREFRINGENCE-LIKE 22 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189454.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LRS2
      UniProtKB/TrEMBL
      A0A178VII6
      Conserved Domains (2) summary
      pfam13839
      Location:122 → 411
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:69 → 121
      PMR5N; PMR5 N terminal Domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LRS2.1

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