U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SYP32 syntaxin of plants 32 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822024, updated on 18-Sep-2024

    Summary

    Official Symbol
    SYP32
    Official Full Name
    syntaxin of plants 32
    Primary source
    TAIR:AT3G24350
    Locus tag
    AT3G24350
    See related
    Araport:AT3G24350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSYP32; syntaxin of plants 32; syntaxin of plants 32
    Summary
    member of Glycoside Hydrolase Family 17
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See SYP32 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (8837542..8839702)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene chromatin remodeling 40 Neighboring gene ncRNA Neighboring gene ATP-dependent caseinolytic (Clp) protease/crotonase family protein Neighboring gene pseudo Neighboring gene pseudo

    Bibliography

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001203032.1
    NM_113342.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables SNAP receptor activity TAS
    Traceable Author Statement
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within intracellular protein transport TAS
    Traceable Author Statement
    more info
    PubMed 
    acts_upstream_of_or_within membrane fusion TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
     
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    PubMed 

    General protein information

    Preferred Names
    syntaxin of plants 32
    NP_001189961.1
    • syntaxin of plants 32 (SYP32); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, cellular membrane fusion; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 31 (TAIR:AT5G05760.1).
    NP_189078.2
    • syntaxin of plants 32 (SYP32); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, cellular membrane fusion; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 31 (TAIR:AT5G05760.1); Has 1379 Blast hits to 1377 proteins in 233 species: Archae - 0; Bacteria - 12; Metazoa - 543; Fungi - 411; Plants - 204; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8837542..8839702
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113342.4NP_189078.2  syntaxin of plants 32 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189078.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LK09
      UniProtKB/TrEMBL
      A0A178VCU6, A0A5S9XFR0, A0A654FAG2
      Conserved Domains (1) summary
      cd15844
      Location:258342
      SNARE_syntaxin5; SNARE motif of syntaxin 5
    2. NM_001203032.1NP_001189961.1  syntaxin of plants 32 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189961.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FAG2, F4J6K6
      Conserved Domains (1) summary
      cd15844
      Location:272356
      SNARE_syntaxin5; SNARE motif of syntaxin 5