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    Vacuolar import/degradation, Vid27-related protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821458, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Vacuolar import/degradation, Vid27-related protein
    Primary source
    TAIR:AT3G19240
    Locus tag
    AT3G19240
    See related
    Araport:AT3G19240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (6664044..6667021)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene protein disulfide isomerase Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene tRNA-Arg Neighboring gene transmembrane protein, putative (DUF677) Neighboring gene LAG1 homologue 2 Neighboring gene cytochrome P450, family 707, subfamily A, polypeptide 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. DEFECTIVE EMBRYO AND MERISTEMS genes are required for cell division and gamete viability in Arabidopsis. Lee CH, et al. PLoS Genet, 2021 May. PMID 33999950, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. DEFECTIVE EMBRYO AND MERISTEMS genes are required for cell division and gamete viability in Arabidopsis.
      Title: DEFECTIVE EMBRYO AND MERISTEMS genes are required for cell division and gamete viability in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_112811.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nuclear envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Vacuolar import/degradation, Vid27-related protein
    NP_188555.1
    • Vacuolar import/degradation, Vid27-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Vacuolar import/degradation, Vid27-related (InterPro:IPR013863); BEST Arabidopsis thaliana protein match is: Vacuolar import/degradation, Vid27-related protein (TAIR:AT4G33400.1); Has 312 Blast hits to 307 proteins in 136 species: Archae - 0; Bacteria - 1; Metazoa - 11; Fungi - 168; Plants - 82; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6664044..6667021
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112811.3 → NP_188555.1  Vacuolar import/degradation, Vid27-related protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188555.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VKS0, A0A384LQM2, A0A5S9XDM0, Q9LJK5
      Conserved Domains (1) summary
      pfam08553
      Location:320 → 642
      VID27; VID27 cytoplasmic protein
    Nucleotide Protein
    Heading Accession and Version

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