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    KLCR2 Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822420, updated on 18-Sep-2024

    Summary

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    Official Symbol
    KLCR2
    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT3G27960
    Locus tag
    AT3G27960
    See related
    Araport:AT3G27960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    kinesin light chain-related 2
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    Genomic context

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    See KLCR2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (10380230..10383249, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene LOB domain-containing protein 26 Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene pseudo Neighboring gene Exonuclease family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FRA1 Kinesin Modulates the Lateral Stability of Cortical Microtubules through Cellulose Synthase-Microtubule Uncoupling Proteins. Ganguly A, et al. Plant Cell, 2020 Aug. PMID 32487563, Free PMC Article
    2. Independently evolved virulence effectors converge onto hubs in a plant immune system network. Mukhtar MS, et al. Science, 2011 Jul 29. PMID 21798943, Free PMC Article
    3. Penetration of the stigma and style elicits a novel transcriptome in pollen tubes, pointing to genes critical for growth in a pistil. Qin Y, et al. PLoS Genet, 2009 Aug. PMID 19714218, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001338926.1
    NM_001338927.1
    NM_113713.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen tube growth IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of defense response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    colocalizes_with cortical microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_189435.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: pollen tube growth; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G27500.1); Has 11593 Blast hits to 4983 proteins in 549 species: Archae - 196; Bacteria - 3972; Metazoa - 4777; Fungi - 883; Plants - 387; Viruses - 3; Other Eukaryotes - 1375 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10380230..10383249 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113713.4 → NP_189435.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189435.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q7XA91, Q9LII8
      UniProtKB/TrEMBL
      A0A178VM99, A0A654FBG6
      Conserved Domains (3) summary
      COG0457
      Location:239 → 486
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:373 → 405
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:538 → 603
      TPR_12; Tetratricopeptide repeat

    2. NM_001338926.1 → NP_001326009.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VM99, A0A1I9LMZ1

    3. NM_001338927.1 → NP_001326010.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q7XA91, Q9LII8
      UniProtKB/TrEMBL
      A0A178VM99, A0A654FBG6
      Conserved Domains (3) summary
      COG0457
      Location:239 → 486
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:373 → 405
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:538 → 603
      TPR_12; Tetratricopeptide repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LII8.1

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