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    hypothetical protein (DUF626) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821488, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (DUF626)
    Primary source
    TAIR:AT3G19520
    Locus tag
    AT3G19520
    See related
    Araport:AT3G19520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (6772570..6775445)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein Neighboring gene apoptosis inhibitor Neighboring gene uncharacterized protein Neighboring gene glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620) Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001125190.1
    NM_112841.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (DUF626)
    NP_001118662.1
    • Protein of unknown function (DUF626); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G28500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_566641.1
    • Protein of unknown function (DUF626); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G28500.1); Has 219 Blast hits to 218 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6772570..6775445
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338404.1 → NP_001327780.1  hypothetical protein (DUF626) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNN4, A0A1I9LTD3

    2. NM_001338405.1 → NP_001327781.1  hypothetical protein (DUF626) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTD4
      Conserved Domains (1) summary
      cl19902
      Location:19 → 203
      protein_MS5; Protein MS5

    3. NM_112841.5 → NP_566641.1  hypothetical protein (DUF626) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566641.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LAI5, Q9LH42
      UniProtKB/TrEMBL
      A0A178VNN4, A0A654F8S0
      Conserved Domains (1) summary
      cl19902
      Location:19 → 289
      protein_MS5; Protein MS5

    4. NM_001125190.1 → NP_001118662.1  hypothetical protein (DUF626) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118662.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LAI5, Q9LH42
      UniProtKB/TrEMBL
      A0A178VNN4, A0A654F8S0
      Conserved Domains (1) summary
      cl19902
      Location:19 → 289
      protein_MS5; Protein MS5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LH42.1

    Gene LinkOut

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