U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    late embryogenesis abundant domain-containing protein / LEA domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843541, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    late embryogenesis abundant domain-containing protein / LEA domain-containing protein
    Primary source
    TAIR:AT1G72100
    Locus tag
    AT1G72100
    See related
    Araport:AT1G72100
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28P5.13; F28P5_13
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (27127170..27128978)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Methylthiotransferase Neighboring gene O-acyltransferase (WSD1-like) family protein Neighboring gene Major facilitator superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The ubiquitous distribution of late embryogenesis abundant proteins across cell compartments in Arabidopsis offers tailored protection against abiotic stress. Candat A, et al. Plant Cell, 2014 Jul. PMID 25005920, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_105868.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in pexophagosome HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    late embryogenesis abundant domain-containing protein / LEA domain-containing protein
    NP_177355.1
    • late embryogenesis abundant domain-containing protein / LEA domain-containing protein; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (LEA) family protein (TAIR:AT1G22600.1); Has 5957 Blast hits to 3336 proteins in 883 species: Archae - 38; Bacteria - 2417; Metazoa - 675; Fungi - 389; Plants - 1426; Viruses - 20; Other Eukaryotes - 992 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27127170..27128978
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105868.3 → NP_177355.1  late embryogenesis abundant domain-containing protein / LEA domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177355.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W580, A0A5S9WRR4, Q84W88, Q9C7H3
      Conserved Domains (3) summary
      pfam02987
      Location:205 → 245
      LEA_4; Late embryogenesis abundant protein
      pfam01442
      Location:88 → 252
      Apolipoprotein; Apolipoprotein A1/A4/E domain
      pfam13664
      Location:318 → 418
      DUF4149; Domain of unknown function (DUF4149)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools