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    RBL6 RHOMBOID-like protein 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837831, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RBL6
    Official Full Name
    RHOMBOID-like protein 6
    Primary source
    TAIR:AT1G12750
    Locus tag
    AT1G12750
    See related
    Araport:AT1G12750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRBL6; RHOMBOID-like protein 6; T12C24.28; T12C24_28
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    Genomic context

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    See RBL6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (4344943..4348390, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene cytochrome P450, family 87, subfamily A, polypeptide 2 Neighboring gene Zinc finger, C3HC4 type (RING finger) family protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001198046.2
    NM_001332047.1
    NM_001332048.1
    NM_001332049.1
    NM_001332050.1
    NM_001332051.1
    NM_101145.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RHOMBOID-like protein 6
    NP_001184975.1
    • RHOMBOID-like protein 6 (RBL6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1).
    NP_001318990.1
    • RHOMBOID-like protein 6 (RBL6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1); Has 6272 Blast hits to 6271 proteins in 1782 species: Archae - 138; Bacteria - 3818; Metazoa - 537; Fungi - 159; Plants - 344; Viruses - 0; Other Eukaryotes - 1276 (source: NCBI BLink).
    NP_172735.1
    • RHOMBOID-like protein 6 (RBL6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 2 (TAIR:AT1G63120.1); Has 6272 Blast hits to 6271 proteins in 1782 species: Archae - 138; Bacteria - 3818; Metazoa - 537; Fungi - 159; Plants - 344; Viruses - 0; Other Eukaryotes - 1276 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4344943..4348390 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101145.3 → NP_172735.1  RHOMBOID-like protein 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172735.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VZ48, Q9LN72
      UniProtKB/TrEMBL
      A0A178WC22
      Conserved Domains (1) summary
      pfam01694
      Location:92 → 232
      Rhomboid; Rhomboid family

    2. NM_001198046.2 → NP_001184975.1  RHOMBOID-like protein 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184975.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VZ48, Q9LN72
      UniProtKB/TrEMBL
      A0A178WC22
      Conserved Domains (1) summary
      pfam01694
      Location:92 → 232
      Rhomboid; Rhomboid family

    3. NM_001332048.1 → NP_001322586.1  RHOMBOID-like protein 6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VZ48, Q9LN72
      UniProtKB/TrEMBL
      A0A178WC22

    4. NM_001332047.1 → NP_001318990.1  RHOMBOID-like protein 6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2H1ZEB4

    5. NM_001332049.1 → NP_001322585.1  RHOMBOID-like protein 6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AUJ6

    6. NM_001332050.1 → NP_001322584.1  RHOMBOID-like protein 6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VZ48, Q9LN72
      UniProtKB/TrEMBL
      A0A178WC22

    7. NM_001332051.1 → NP_001322583.1  RHOMBOID-like protein 6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VZ48, Q9LN72
      UniProtKB/TrEMBL
      A0A178WC22
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VZ48.1

    Gene LinkOut

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