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    RmlC-like cupins superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826622, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RmlC-like cupins superfamily protein
    Primary source
    TAIR:AT4G10300
    Locus tag
    AT4G10300
    See related
    Araport:AT4G10300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9A4.16
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (6384451..6386239)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Wound-responsive family protein Neighboring gene RmlC-like cupins superfamily protein Neighboring gene RmlC-like cupins superfamily protein Neighboring gene reverse transcriptase Neighboring gene high-affinity K+ transporter 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_117098.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RmlC-like cupins superfamily protein
    NP_192768.1
    • RmlC-like cupins superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT3G04300.1); Has 485 Blast hits to 485 proteins in 129 species: Archae - 0; Bacteria - 243; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6384451..6386239
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117098.3 → NP_192768.1  RmlC-like cupins superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192768.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V5V4, A0A5S9XQY4, Q8LEK1, Q9SV91
      Conserved Domains (2) summary
      cd02227
      Location:64 → 133
      cupin_TM1112-like; Thermotoga maritima TM1112 and related proteins, cupin domain
      cl21454
      Location:6 → 71
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version

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