U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828112, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT4G03000
    Locus tag
    AT4G03000
    See related
    Araport:AT4G03000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T4I9.12; T4I9_12
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (1324063..1327520)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene endoplasmic reticulum auxin binding protein 1 Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene RNI-like superfamily protein Neighboring gene transducin family protein / WD-40 repeat family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001340414.1
    NM_116534.5
    NM_202775.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    RING/U-box superfamily protein
    NP_192209.2
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G03365.1); Has 47741 Blast hits to 30371 proteins in 2147 species: Archae - 425; Bacteria - 7273; Metazoa - 21635; Fungi - 3461; Plants - 2162; Viruses - 230; Other Eukaryotes - 12555 (source: NCBI BLink).
    NP_974504.1
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G03365.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      1324063..1327520
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340411.1 → NP_001329452.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7Q9

    2. NM_001340413.1 → NP_001329454.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7R5
      Conserved Domains (1) summary
      COG1196
      Location:465 → 638
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    3. NM_001340412.1 → NP_001329453.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7R8
      Conserved Domains (1) summary
      COG1196
      Location:465 → 645
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    4. NM_116534.5 → NP_192209.2  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192209.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WPJ7, Q0WVX7, Q9ZT97
      UniProtKB/TrEMBL
      A0A178UWK0, A0A5S9XR77
      Conserved Domains (3) summary
      TIGR02168
      Location:474 → 717
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cd00162
      Location:760 → 799
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      pfam13920
      Location:756 → 806
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

    5. NM_001340414.1 → NP_001329455.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7R8
      Conserved Domains (1) summary
      COG1196
      Location:465 → 645
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    6. NM_202775.1 → NP_974504.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974504.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WPJ7, Q0WVX7, Q9ZT97
      UniProtKB/TrEMBL
      A0A178UWK0, A0A5S9XR77
      Conserved Domains (3) summary
      TIGR02168
      Location:474 → 717
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cd00162
      Location:760 → 799
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      pfam13920
      Location:756 → 806
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WPJ7.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.