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    Double Clp-N motif protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826814, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Double Clp-N motif protein
    Primary source
    TAIR:AT4G12060
    Locus tag
    AT4G12060
    See related
    Araport:AT4G12060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16J13.130; F16J13_130
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (7227971..7229993, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Putative AT-hook DNA-binding family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene tRNA-Ala Neighboring gene AT-hook motif nuclear-localized protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Assembly of the chloroplast ATP-dependent Clp protease in Arabidopsis is regulated by the ClpT accessory proteins. Sjögren LL, et al. Plant Cell, 2011 Jan. PMID 21266658, Free PMC Article
    2. Structures, Functions, and Interactions of ClpT1 and ClpT2 in the Clp Protease System of Arabidopsis Chloroplasts. Kim J, et al. Plant Cell, 2015 May. PMID 25921872, Free PMC Article
    3. ClpS1 is a conserved substrate selector for the chloroplast Clp protease system in Arabidopsis. Nishimura K, et al. Plant Cell, 2013 Jun. PMID 23898032, Free PMC Article
    4. Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications. Peltier JB, et al. J Biol Chem, 2004 Feb 6. PMID 14593120
    5. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. In vivo and in vitro assays showed that ClpT1 and ClpT2 can independently interact with the single ClpP ring and ClpPR core, but not with the single ClpR ring.
      Title: Structures, Functions, and Interactions of ClpT1 and ClpT2 in the Clp Protease System of Arabidopsis Chloroplasts.
    2. Data show that ClpS1 (AT1G68660) interacts with plastid ClpC1 (AT5G50920), ClpC2 (AT3G48870), but not with ClpT1 (AT4G25370) or ClpT2 (AT4G12060).
      Title: ClpS1 is a conserved substrate selector for the chloroplast Clp protease system in Arabidopsis.
    3. ClpT1 and ClpT2 regulate the assembly of the Clp proteolytic core.
      Title: Assembly of the chloroplast ATP-dependent Clp protease in Arabidopsis is regulated by the ClpT accessory proteins.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_117276.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein histidine kinase binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in plastid stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Double Clp-N motif protein
    NP_567386.1
    • Double Clp-N motif protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein metabolic process; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Double Clp-N motif protein (TAIR:AT4G25370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7227971..7229993 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117276.3 → NP_567386.1  Double Clp-N motif protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567386.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GW78, Q8LBJ1, Q9SZ71
      UniProtKB/TrEMBL
      A0A178UUP1
      Conserved Domains (1) summary
      pfam02861
      Location:108 → 157
      Clp_N; Clp amino terminal domain, pathogenicity island component
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GW78.1

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