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    RNA-binding CRS1 / YhbY (CRM) domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826921, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-binding CRS1 / YhbY (CRM) domain protein
    Primary source
    TAIR:AT4G13070
    Locus tag
    AT4G13070
    See related
    Araport:AT4G13070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25G13.160; F25G13_160
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (7621346..7623402, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Acyl-ACP thioesterase Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene RALF-like 30 Neighboring gene xyloglucan endotransglucosylase/hydrolase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CFM6 is an Essential CRM Protein Required for the Splicing of nad5 Transcript in Arabidopsis Mitochondria. Lin WC, et al. Plant Cell Physiol, 2022 Feb 15. PMID 34752612
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CFM6 is an Essential CRM Protein Required for the Splicing of nad5 Transcript in Arabidopsis Mitochondria.
      Title: CFM6 is an Essential CRM Protein Required for the Splicing of nad5 Transcript in Arabidopsis Mitochondria.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_117376.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding CRS1 / YhbY (CRM) domain protein
    NP_193043.2
    • RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT2G28480.1); Has 317 Blast hits to 276 proteins in 27 species: Archae - 2; Bacteria - 4; Metazoa - 5; Fungi - 0; Plants - 270; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7621346..7623402 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117376.5 → NP_193043.2  RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193043.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UTY4, A0A5S9XRS6, Q67YJ7
      Conserved Domains (1) summary
      smart01103
      Location:182 → 267
      CRS1_YhbY; Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly
    Nucleotide Protein
    Heading Accession and Version

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