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    ATERDJ2B DnaJ / Sec63 Brl domains-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827866, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATERDJ2B
    Official Full Name
    DnaJ / Sec63 Brl domains-containing protein
    Primary source
    TAIR:AT4G21180
    Locus tag
    AT4G21180
    See related
    Araport:AT4G21180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7J7.120; F7J7_120
    Summary
    J domain protein localized in ER membrane.
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    Genomic context

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    See ATERDJ2B in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Sequence:
    Chromosome: 4; NC_003075.7 (11288892..11292389)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ribophorin II (RPN2) family protein Neighboring gene Calcium-dependent ARF-type GTPase activating protein family Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Cytochrome c oxidase biogenesis protein Cmc1-like protein Neighboring gene gibberellin 2-oxidase 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana has a set of J proteins in the endoplasmic reticulum that are conserved from yeast to animals and plants. Yamamoto M, et al. Plant Cell Physiol, 2008 Oct. PMID 18718935
    2. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001341475.1
    NM_118237.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in endoplasmic reticulum HDA PubMed 
    located_in endoplasmic reticulum membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DnaJ / Sec63 Brl domains-containing protein
    NP_567621.1
    • ATERDJ2B; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: integral to endoplasmic reticulum membrane, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DnaJ / Sec63 Brl domains-containing protein (TAIR:AT1G79940.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11288892..11292389
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118237.4 → NP_567621.1  DnaJ / Sec63 Brl domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567621.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JIN3, O49559, Q949Z5
      UniProtKB/TrEMBL
      A0A5S9XV96, A0A654FRB8
      Conserved Domains (2) summary
      smart00611
      Location:207 → 599
      SEC63; Domain of unknown function in Sec63p, Brr2p and other proteins
      pfam00226
      Location:99 → 161
      DnaJ; DnaJ domain

    2. NM_001341475.1 → NP_001328817.1  DnaJ / Sec63 Brl domains-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5T4, A0A5S9XV96, A0A654FRB8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JIN3.1

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