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    SWIB complex BAF60b domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828331, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SWIB complex BAF60b domain-containing protein
    Primary source
    TAIR:AT4G22360
    Locus tag
    AT4G22360
    See related
    Araport:AT4G22360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T10I14.190; T10I14_190
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (11807257..11810117)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene microRNA ath-MIR8176 precursor Neighboring gene Alkaline phytoceramidase (aPHC) Neighboring gene cytidinediphosphate diacylglycerol synthase 2 Neighboring gene Ubiquitin C-terminal hydrolases superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_118362.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SWIB complex BAF60b domain-containing protein
    NP_567661.1
    • SWIB complex BAF60b domain-containing protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835), DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT3G19080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11807257..11810117
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118362.4 → NP_567661.1  SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567661.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UV34, Q8LFA6, Q93YR5
      Conserved Domains (3) summary
      smart00151
      Location:197 → 273
      SWIB; SWI complex, BAF60b domains
      pfam02201
      Location:309 → 381
      SWIB; SWIB/MDM2 domain
      pfam08766
      Location:4 → 56
      DEK_C; DEK C terminal domain
    Nucleotide Protein
    Heading Accession and Version

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