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    SNARE associated Golgi protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828384, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SNARE associated Golgi protein family
    Primary source
    TAIR:AT4G22850
    Locus tag
    AT4G22850
    See related
    Araport:AT4G22850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7H19.30
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (11993955..11996335)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene YCF49-like protein Neighboring gene Sodium Bile acid symporter family Neighboring gene Cell cycle regulated microtubule associated protein Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001160793.1
    NM_118414.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SNARE associated Golgi protein family
    NP_001154265.1
    • SNARE associated Golgi protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G12000.1); Has 1376 Blast hits to 1373 proteins in 368 species: Archae - 4; Bacteria - 671; Metazoa - 94; Fungi - 36; Plants - 289; Viruses - 0; Other Eukaryotes - 282 (source: NCBI BLink).
    NP_194016.2
    • SNARE associated Golgi protein family; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G12000.1); Has 1827 Blast hits to 1824 proteins in 531 species: Archae - 7; Bacteria - 902; Metazoa - 120; Fungi - 93; Plants - 292; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11993955..11996335
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118414.4 → NP_194016.2  SNARE associated Golgi protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194016.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V1R0, A0A5S9XVL4, Q84JU5
      Conserved Domains (2) summary
      COG0586
      Location:81 → 282
      DedA; Uncharacterized membrane protein DedA, SNARE-associated domain [Function unknown]
      pfam09335
      Location:118 → 239
      SNARE_assoc; SNARE associated Golgi protein

    2. NM_001160793.1 → NP_001154265.1  SNARE associated Golgi protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154265.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V1R0, A0A5S9XVL4, F4JMN3
      Conserved Domains (1) summary
      pfam09335
      Location:118 → 239
      SNARE_assoc; SNARE associated Golgi protein
    Nucleotide Protein
    Heading Accession and Version

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