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    MAC/Perforin domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828532, updated on 18-Sep-2024

    Summary

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    Official Full Name
    MAC/Perforin domain-containing protein
    Primary source
    TAIR:AT4G24290
    Locus tag
    AT4G24290
    See related
    Araport:AT4G24290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22A6.120; T22A6_120
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (12594045..12598097)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene chloroplast heat shock protein 70-1 Neighboring gene Peptidase C50, separase Neighboring gene transmembrane protein, putative (DUF679)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001341662.1
    NM_118562.2
    NM_179102.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of salicylic acid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    MAC/Perforin domain-containing protein
    NP_567698.1
    • MAC/Perforin domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin (MACPF) domain (InterPro:IPR020864), Membrane attack complex component/perforin (MACPF) domain, metazoa (InterPro:IPR020865); BEST Arabidopsis thaliana protein match is: MAC/Perforin domain-containing protein (TAIR:AT1G28380.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_849433.1
    • MAC/Perforin domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin (MACPF) domain (InterPro:IPR020864), Membrane attack complex component/perforin (MACPF) domain, metazoa (InterPro:IPR020865); BEST Arabidopsis thaliana protein match is: MAC/Perforin domain-containing protein (TAIR:AT1G28380.1); Has 264 Blast hits to 263 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 51; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12594045..12598097
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179102.5 → NP_849433.1  MAC/Perforin domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849433.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B3DN86, F4JQ79, Q9STW5
      UniProtKB/TrEMBL
      A0A178V3R7, A0A5S9XVV0, A0A7G2F393
      Conserved Domains (1) summary
      pfam01823
      Location:108 → 318
      MACPF; MAC/Perforin domain

    2. NM_118562.2 → NP_567698.1  MAC/Perforin domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567698.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9STW5
      Conserved Domains (1) summary
      smart00457
      Location:126 → 320
      MACPF; membrane-attack complex / perforin

    3. NM_001341662.1 → NP_001328303.1  MAC/Perforin domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B3DN86, F4JQ79, Q9STW5
      UniProtKB/TrEMBL
      A0A178V3R7, A0A5S9XVV0, A0A7G2F393
      Conserved Domains (1) summary
      pfam01823
      Location:108 → 318
      MACPF; MAC/Perforin domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9STW5.1

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