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    WRKY20 WRKY family transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828771, updated on 18-Sep-2024

    Summary

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    Official Symbol
    WRKY20
    Official Full Name
    WRKY family transcription factor family protein
    Primary source
    TAIR:AT4G26640
    Locus tag
    AT4G26640
    See related
    Araport:AT4G26640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtWRKY20; T15N24.90; T15N24_90
    Summary
    member of WRKY Transcription Factor; Group I
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    Genomic context

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    See WRKY20 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (13437005..13441884, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene D6 protein kinase like 1 Neighboring gene Sucrase/ferredoxin-like family protein Neighboring gene DEK domain-containing chromatin associated protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene kinesin-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cross activity of orthologous WRKY transcription factors in wheat and Arabidopsis. Proietti S, et al. J Exp Bot, 2011 Mar. PMID 21193575, Free PMC Article
    2. The WRKY superfamily of plant transcription factors. Eulgem T, et al. Trends Plant Sci, 2000 May. PMID 10785665
    3. Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors. Sparks EE, et al. Dev Cell, 2016 Dec 5. PMID 27923776, Free PMC Article
    4. Promoter-based integration in plant defense regulation. Li B, et al. Plant Physiol, 2014 Dec. PMID 25352272, Free PMC Article
    5. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Taylor-Teeples M, et al. Nature, 2015 Jan 29. PMID 25533953, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001341821.1
    NM_001341822.1
    NM_001341823.1
    NM_001341824.1
    NM_001341825.1
    NM_118798.2
    NM_179119.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to 1-aminocyclopropane-1-carboxylic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    WRKY family transcription factor family protein
    NP_567752.1
    • WRKY20; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 3 (TAIR:AT2G03340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_849450.1
    • WRKY20; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 2 (TAIR:AT5G56270.1); Has 5750 Blast hits to 3121 proteins in 204 species: Archae - 0; Bacteria - 8; Metazoa - 8; Fungi - 10; Plants - 5662; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13437005..13441884 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179119.5 → NP_849450.1  WRKY family transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849450.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H1E9, Q93WV0, Q94AP6, Q9SUA0
      UniProtKB/TrEMBL
      A0A5S9XW78, A0A654FT11, A0A7G2F5T4, Q6H942
      Conserved Domains (2) summary
      smart00774
      Location:380 → 437
      WRKY; DNA binding domain
      pfam03106
      Location:212 → 266
      WRKY; WRKY DNA -binding domain

    2. NM_001341823.1 → NP_001329241.1  WRKY family transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B753

    3. NM_001341821.1 → NP_001329242.1  WRKY family transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B753

    4. NM_001341824.1 → NP_001329240.1  WRKY family transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B753

    5. NM_001341822.1 → NP_001329238.1  WRKY family transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B753

    6. NM_001341825.1 → NP_001329239.1  WRKY family transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B739, A0A5S9XW78, A0A7G2F5T4

    7. NM_118798.2 → NP_567752.1  WRKY family transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567752.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XW78, A0A7G2F5T4
      Conserved Domains (2) summary
      smart00774
      Location:308 → 365
      WRKY; DNA binding domain
      pfam03106
      Location:140 → 194
      WRKY; WRKY DNA -binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93WV0.1

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