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    SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829247, updated on 3-Dec-2024

    Summary

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    Official Full Name
    SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein
    Primary source
    TAIR:AT4G31200
    Locus tag
    AT4G31200
    See related
    Araport:AT4G31200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8F16.10; F8F16_10
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (15161600..15164936, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene oxidoreductase Neighboring gene DNA topoisomerase, type IA, core Neighboring gene kinase with adenine nucleotide alpha hydrolases-like domain-containing protein Neighboring gene protein kinase C-like zinc finger protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SWAP1-SFPS-RRC1 splicing factor complex modulates pre-mRNA splicing to promote photomorphogenesis in Arabidopsis. Kathare PK, et al. Proc Natl Acad Sci U S A, 2022 Nov. PMID 36282917, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    NM_001342064.1
    NM_119269.4
    NM_202921.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular calcium ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein
    NP_001320099.1
    • SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), SWAP/Surp (InterPro:IPR000061), RNA polymerase II, large subunit, CTD (InterPro:IPR006569); Has 15613 Blast hits to 10676 proteins in 664 species: Archae - 6; Bacteria - 799; Metazoa - 6418; Fungi - 3065; Plants - 3018; Viruses - 214; Other Eukaryotes - 2093 (source: NCBI BLink).
    NP_194848.1
    • SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), SWAP/Surp (InterPro:IPR000061), RNA polymerase II, large subunit, CTD (InterPro:IPR006569); Has 15613 Blast hits to 10676 proteins in 664 species: Archae - 6; Bacteria - 799; Metazoa - 6418; Fungi - 3065; Plants - 3018; Viruses - 214; Other Eukaryotes - 2093 (source: NCBI BLink).
    NP_974650.1
    • SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), SWAP/Surp (InterPro:IPR000061), RNA polymerase II, large subunit, CTD (InterPro:IPR006569); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15161600..15164936 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342064.1 → NP_001320099.1  SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49570
      UniProtKB/TrEMBL
      A0A178UX36
      Conserved Domains (2) summary
      smart00648
      Location:130 → 179
      SWAP; Suppressor-of-White-APricot splicing regulator
      pfam04818
      Location:275 → 400
      CTD_bind; RNA polymerase II-binding domain

    2. NM_119269.4 → NP_194848.1  SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194848.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49570
      UniProtKB/TrEMBL
      A0A178UX36
      Conserved Domains (2) summary
      smart00648
      Location:130 → 179
      SWAP; Suppressor-of-White-APricot splicing regulator
      pfam04818
      Location:275 → 400
      CTD_bind; RNA polymerase II-binding domain

    3. NM_202921.2 → NP_974650.1  SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974650.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49570
      UniProtKB/TrEMBL
      A0A178UX36
      Conserved Domains (2) summary
      smart00648
      Location:130 → 179
      SWAP; Suppressor-of-White-APricot splicing regulator
      pfam04818
      Location:275 → 400
      CTD_bind; RNA polymerase II-binding domain
    Nucleotide Protein
    Heading Accession and Version

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