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    Biotin/lipoate A/B protein ligase family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829232, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Biotin/lipoate A/B protein ligase family
    Primary source
    TAIR:AT4G31050
    Locus tag
    AT4G31050
    See related
    Araport:AT4G31050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6I18.40; F6I18_40; LIP2; octanoyl- transferase
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (15114250..15115633)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RNA-binding CRS1 / YhbY (CRM) domain-containing protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Putative membrane lipoprotein Neighboring gene CemA-like proton extrusion protein-like protein Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene PPR superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_119255.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lipoyl(octanoyl) transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Biotin/lipoate A/B protein ligase family
    NP_567866.1
    • Biotin/lipoate A/B protein ligase family; FUNCTIONS IN: lipoyltransferase activity, octanoyltransferase activity, catalytic activity; INVOLVED IN: protein modification process, lipoate biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octanoyltransferase, conserved site (InterPro:IPR020605), Octanoyltransferase (InterPro:IPR000544), Biotin/lipoate A/B protein ligase (InterPro:IPR004143); BEST Arabidopsis thaliana protein match is: Biotin/lipoate A/B protein ligase family (TAIR:AT1G47578.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15114250..15115633
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119255.2 → NP_567866.1  Biotin/lipoate A/B protein ligase family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567866.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65545, Q948J9
      UniProtKB/TrEMBL
      A0A178UT11, A0A5S9XZN6
      Conserved Domains (1) summary
      cl14057
      Location:47 → 273
      BPL_LplA_LipB; Biotin/lipoate A/B protein ligase family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q948J9.1

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