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    Plant Tudor-like RNA-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829379, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Plant Tudor-like RNA-binding protein
    Primary source
    TAIR:AT4G32440
    Locus tag
    AT4G32440
    See related
    Araport:AT4G32440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8B4.140; F8B4_140
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (15656681..15660223)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene ncRNA Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203961.1
    NM_119396.2
    NM_202931.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Plant Tudor-like RNA-binding protein
    NP_001190890.1
    • Plant Tudor-like RNA-binding protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: Plant Tudor-like protein (TAIR:AT2G25590.1).
    NP_194970.1
    • Plant Tudor-like RNA-binding protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491), Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: Plant Tudor-like protein (TAIR:AT2G25590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_974660.1
    • Plant Tudor-like RNA-binding protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), ENT (InterPro:IPR005491), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: Plant Tudor-like protein (TAIR:AT2G25590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15656681..15660223
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203961.1 → NP_001190890.1  Plant Tudor-like RNA-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190890.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UV57, A0A7G2F7I8, C0Z2F6
      Conserved Domains (2) summary
      smart00743
      Location:69 → 125
      Agenet; Tudor-like domain present in plant sequences
      pfam05641
      Location:6 → 64
      Agenet; Agenet domain

    2. NM_202931.2 → NP_974660.1  Plant Tudor-like RNA-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974660.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FUU8, Q0WP65
      Conserved Domains (3) summary
      smart00743
      Location:69 → 125
      Agenet; Tudor-like domain present in plant sequences
      pfam03735
      Location:335 → 360
      ENT; ENT domain
      pfam05641
      Location:6 → 64
      Agenet; Agenet domain

    3. NM_119396.2 → NP_194970.1  Plant Tudor-like RNA-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194970.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UT15, Q9SUU8
      Conserved Domains (3) summary
      smart00743
      Location:69 → 125
      Agenet; Tudor-like domain present in plant sequences
      pfam03735
      Location:335 → 369
      ENT; ENT domain
      pfam05641
      Location:6 → 67
      Agenet; Agenet domain
    Nucleotide Protein
    Heading Accession and Version

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