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    ferric reductase-like transmembrane component family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823724, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ferric reductase-like transmembrane component family protein
    Primary source
    TAIR:AT3G45810
    Locus tag
    AT3G45810
    See related
    Araport:AT3G45810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    RbohJ; Respiratory burst oxidase homolog J
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    13
    Sequence:
    Chromosome: 3; NC_003074.8 (16832726..16837792, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Plant protein 1589 of unknown function Neighboring gene uncharacterized protein Neighboring gene nuclear factor kappa-B-binding-like protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Apoplastic ROS production upon pollination by RbohH and RbohJ in Arabidopsis. Kaya H, et al. Plant Signal Behav, 2015. PMID 25751652, Free PMC Article
    2. Pollen tube NAD(P)H oxidases act as a speed control to dampen growth rate oscillations during polarized cell growth. Lassig R, et al. Plant J, 2014 Apr. PMID 24506280
    3. ANXUR receptor-like kinases coordinate cell wall integrity with growth at the pollen tube tip via NADPH oxidases. Boisson-Dernier A, et al. PLoS Biol, 2013 Nov. PMID 24302886, Free PMC Article
    4. Production of reactive oxygen species by plant NADPH oxidases. Sagi M, et al. Plant Physiol, 2006 Jun. PMID 16760484, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. apoplastic reactive oxygen species derived from RbohH and RbohJ are involved in pollen tube elongation into the stigmatic papillae by affecting the cell wall metabolism.[RbohJ]
      Title: Apoplastic ROS production upon pollination by RbohH and RbohJ in Arabidopsis.
    2. RBOHH and RBOHJ were specifically expressed in pollen and dynamically targeted to distinct and overlapping plasma membrane domains at the pollen tube tip. Functional loss of RBOHH and RBOHJ in homozygous double mutants resulted in reduced fertility.
      Title: Pollen tube NAD(P)H oxidases act as a speed control to dampen growth rate oscillations during polarized cell growth.
    3. Disruption of the pollen expressed NADPH oxidases RbohH and RbohJ triggers altered reproductive phenotypes.
      Title: ANXUR receptor-like kinases coordinate cell wall integrity with growth at the pollen tube tip via NADPH oxidases.
    Submit: New GeneRIF Correction

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ferric reductase-like transmembrane component family protein
    NP_190167.2
    • ferric reductase-like transmembrane component family protein; FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, flower, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: ferric reductase-like transmembrane component family protein (TAIR:AT5G60010.1); Has 1893 Blast hits to 1761 proteins in 285 species: Archae - 4; Bacteria - 168; Metazoa - 708; Fungi - 301; Plants - 526; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16832726..16837792 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114450.3 → NP_190167.2  ferric reductase-like transmembrane component family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190167.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LZU9
      UniProtKB/TrEMBL
      A0A178V8I3
      Conserved Domains (6) summary
      COG5126
      Location:110 → 270
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
      pfam01794
      Location:376 → 522
      Ferric_reduct; Ferric reductase like transmembrane component
      pfam08022
      Location:566 → 693
      FAD_binding_8; FAD-binding domain
      pfam08030
      Location:776 → 894
      NAD_binding_6; Ferric reductase NAD binding domain
      pfam08414
      Location:110 → 207
      NADPH_Ox; Respiratory burst NADPH oxidase
      cl08302
      Location:187 → 234
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LZU9.2

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