U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    HNH endonuclease [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823903, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    HNH endonuclease
    Primary source
    TAIR:AT3G47490
    Locus tag
    AT3G47490
    See related
    Araport:AT3G47490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (17498148..17501006)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Calcium-binding EF-hand family protein Neighboring gene cycling DOF factor 3 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001203098.1
    NM_001339314.1
    NM_114617.4
    NM_202664.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    HNH endonuclease
    NP_001190027.1
    • HNH endonuclease; FUNCTIONS IN: endonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HNH endonuclease (InterPro:IPR002711); BEST Arabidopsis thaliana protein match is: HNH endonuclease domain-containing protein (TAIR:AT1G18680.1).
    NP_190333.1
    • HNH endonuclease; FUNCTIONS IN: nucleic acid binding, endonuclease activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HNH nuclease (InterPro:IPR003615), HNH endonuclease (InterPro:IPR002711); BEST Arabidopsis thaliana protein match is: HNH endonuclease domain-containing protein (TAIR:AT1G18680.1); Has 116 Blast hits to 116 proteins in 31 species: Archae - 0; Bacteria - 23; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
    NP_974393.1
    • HNH endonuclease; BEST Arabidopsis thaliana protein match is: HNH endonuclease domain-containing protein (TAIR:AT1G18680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17498148..17501006
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339311.1 → NP_001327109.1  HNH endonuclease [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRA7, A0A5S9XIT3

    2. NM_001339312.1 → NP_001327110.1  HNH endonuclease [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRA9

    3. NM_001339313.1 → NP_001327111.1  HNH endonuclease [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRA9

    4. NM_001203098.1 → NP_001190027.1  HNH endonuclease [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190027.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EVE3, F4JBJ9
      Conserved Domains (1) summary
      cl00083
      Location:111 → 170
      HNHc; HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and ...

    5. NM_001339314.1 → NP_001327112.1  HNH endonuclease [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRB0

    6. NM_114617.4 → NP_190333.1  HNH endonuclease [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190333.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XIT3, Q9SN88
      Conserved Domains (1) summary
      cd00085
      Location:142 → 187
      HNHc; HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and ...

    7. NM_202664.2 → NP_974393.1  HNH endonuclease [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974393.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q3EAN6
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.