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    ATSMC2 Structural maintenance of chromosomes (SMC) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823900, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATSMC2
    Official Full Name
    Structural maintenance of chromosomes (SMC) family protein
    Primary source
    TAIR:AT3G47460
    Locus tag
    AT3G47460
    See related
    Araport:AT3G47460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Summary
    member of SMC subfamily
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    Genomic context

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    See ATSMC2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    20
    Sequence:
    Chromosome: 3; NC_003074.8 (17486490..17493395)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene peroxin 11B Neighboring gene tonoplast intrinsic protein 5;1 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene light-harvesting chlorophyll-protein complex I subunit A4 Neighboring gene ncRNA Neighboring gene Calcium-binding EF-hand family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis thaliana ABC protein superfamily, a complete inventory. Sánchez-Fernández R, et al. J Biol Chem, 2001 Aug 10. PMID 11346655
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_114614.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Structural maintenance of chromosomes (SMC) family protein
    NP_190330.1
    • ATSMC2; FUNCTIONS IN: transporter activity; INVOLVED IN: chromosome organization; LOCATED IN: chromosome; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 2 (TAIR:AT5G62410.1); Has 105566 Blast hits to 56901 proteins in 3202 species: Archae - 1526; Bacteria - 19204; Metazoa - 44960; Fungi - 8478; Plants - 5252; Viruses - 457; Other Eukaryotes - 25689 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17486490..17493395
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339310.1 → NP_001325474.1  Structural maintenance of chromosomes (SMC) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNF2, A0A1I9LLC4

    2. NM_114614.4 → NP_190330.1  Structural maintenance of chromosomes (SMC) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190330.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SN90, Q9STX7
      UniProtKB/TrEMBL
      A0A178VNF2
      Conserved Domains (5) summary
      cd03273
      Location:1 → 172
      ABC_SMC2_euk; ATP-binding cassette domain of eukaryotic SMC2 proteins
      smart00968
      Location:520 → 634
      SMC_hinge; SMC proteins Flexible Hinge Domain
      COG1196
      Location:1 → 1163
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cl21455
      Location:1070 → 1164
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
      cl23763
      Location:241 → 375
      MCP_signal; Methyl-accepting chemotaxis protein (MCP), signaling domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SN90.1

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