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    RAB6-interacting golgin (DUF662) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824456, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RAB6-interacting golgin (DUF662)
    Primary source
    TAIR:AT3G52900
    Locus tag
    AT3G52900
    See related
    Araport:AT3G52900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (19613078..19614027)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene monodehydroascorbate reductase 1 Neighboring gene KCBP-interacting protein kinase Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene growth-regulating factor 4 Neighboring gene transcriptional activator (DUF662)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_115150.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RAB6-interacting golgin (DUF662)
    NP_190858.1
    • Family of unknown function (DUF662); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT2G36355.1); Has 299 Blast hits to 297 proteins in 71 species: Archae - 2; Bacteria - 15; Metazoa - 102; Fungi - 2; Plants - 124; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19613078..19614027
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115150.3 → NP_190858.1  RAB6-interacting golgin (DUF662) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190858.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VKY3, A0A384KDK5, A0A654FG66, Q8LFC2, Q9LFA1
      Conserved Domains (1) summary
      pfam04949
      Location:13 → 162
      Transcrip_act; Transcriptional activator
    Nucleotide Protein
    Heading Accession and Version

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