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    STV1 Ribosomal protein L24e family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824468, updated on 18-Sep-2024

    Summary

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    Official Symbol
    STV1
    Official Full Name
    Ribosomal protein L24e family protein
    Primary source
    TAIR:AT3G53020
    Locus tag
    AT3G53020
    See related
    Araport:AT3G53020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    RIBOSOMAL PROTEIN L24; RPL24; RPL24B; SHORT VALVE1
    Summary
    RPL24B encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B. Mutants showed defects in apical-basal gynoecium patterning similar to previously described ett and mp mutants. Transformation of stv1-1 mutant with a uORF-eliminated ETT construct partially suppressed the stv1 gynoecium phenotype, implying that STV1 could influence ETT translation through its uORFs. Regulated by TCP20.
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    Genomic context

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    See STV1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (19660488..19662025, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ser/arg-rich protein kinase 4 Neighboring gene late embryogenesis abundant protein, putative / LEA protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis STV1 protein, responsible for translation reinitiation, is required for auxin-mediated gynoecium patterning. Nishimura T, et al. Plant Cell, 2005 Nov. PMID 16227452, Free PMC Article
    2. STV1, a ribosomal protein, binds primary microRNA transcripts to promote their interaction with the processing complex in Arabidopsis. Li S, et al. Proc Natl Acad Sci U S A, 2017 Feb 7. PMID 28115696, Free PMC Article
    3. The global translation profile in a ribosomal protein mutant resembles that of an eIF3 mutant. Tiruneh BS, et al. BMC Biol, 2013 Dec 30. PMID 24377433, Free PMC Article
    4. Ribosomal proteins promote leaf adaxial identity. Yao Y, et al. Development, 2008 Apr. PMID 18305007
    5. The function of RH22, a DEAD RNA helicase, in the biogenesis of the 50S ribosomal subunits of Arabidopsis chloroplasts. Chi W, et al. Plant Physiol, 2012 Feb. PMID 22170977, Free PMC Article

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data suggest that SHORT VALVE 1 (STV1) promotes miRNA biogenesis through facilitating the recruitment of pri-miRNAs to their processing complex.
      Title: STV1, a ribosomal protein, binds primary microRNA transcripts to promote their interaction with the processing complex in Arabidopsis.
    2. These data represent the first genome-wide analysis of translation in a eukaryote defective in the large ribosomal subunit. RPL24 and eIF3h play similar but non-identical roles in eukaryotic translation.
      Title: The global translation profile in a ribosomal protein mutant resembles that of an eIF3 mutant.
    3. In addition to the role of RPL24 in ribosome-related whole-plant growth and the development of several organs, RPL24 functions specifically in auxin-mediated apical-basal patterning of the gynoecium. [RPL24B]
      Title: The Arabidopsis STV1 protein, responsible for translation reinitiation, is required for auxin-mediated gynoecium patterning.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_115162.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in adaxial/abaxial pattern specification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within auxin-activated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within gynoecium development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in leaf morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    part_of cytosolic large ribosomal subunit HDA PubMed 
    located_in nucleolus HDA PubMed 
    colocalizes_with nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    colocalizes_with nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein L24e family protein
    NP_190870.1
    • SHORT VALVE1 (STV1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: auxin mediated signaling pathway, gynoecium development, translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, nucleolus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L24e (InterPro:IPR000988); BEST Arabidopsis thaliana protein match is: ribosomal protein L24 (TAIR:AT2G36620.1); Has 1463 Blast hits to 1456 proteins in 346 species: Archae - 110; Bacteria - 20; Metazoa - 460; Fungi - 300; Plants - 340; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19660488..19662025 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115162.4 → NP_190870.1  Ribosomal protein L24e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190870.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P38666, Q33DV0, Q56Z81, Q9LF90
      UniProtKB/TrEMBL
      A0A178V7Q9, A0A5S9XKB3
      Conserved Domains (1) summary
      pfam01246
      Location:4 → 64
      Ribosomal_L24e; Ribosomal protein L24e
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P38666.2

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