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    BME3 Plant-specific GATA-type zinc finger transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824646, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BME3
    Official Full Name
    Plant-specific GATA-type zinc finger transcription factor family protein
    Primary source
    TAIR:AT3G54810
    Locus tag
    AT3G54810
    See related
    Araport:AT3G54810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    BLUE MICROPYLAR END 3; BLUE MICROPYLAR END 3-ZINC FINGER; BME3-ZF; GATA TRANSCRIPTION FACTOR 8; GATA8; T5N23.3
    Summary
    Encodes a protein containing a GATA type zinc finger domain that is expressed in the embryo axis and involved in germination. Mutants have a reduced rate of germination even when stratified.
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    Genomic context

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    See BME3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (20296130..20298827)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ARM repeat superfamily protein Neighboring gene ncRNA Neighboring gene Pleckstrin homology (PH) and lipid-binding START domains-containing protein Neighboring gene plasma membrane intrinsic protein 2;5 Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The BME3 (Blue Micropylar End 3) GATA zinc finger transcription factor is a positive regulator of Arabidopsis seed germination. Liu PP, et al. Plant J, 2005 Dec. PMID 16359389
    2. Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family. Manfield IW, et al. Plant Physiol, 2007 Feb. PMID 17208962, Free PMC Article
    3. Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors. Sparks EE, et al. Dev Cell, 2016 Dec 5. PMID 27923776, Free PMC Article
    4. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
    5. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Taylor-Teeples M, et al. Nature, 2015 Jan 29. PMID 25533953, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_115338.1
    NM_180373.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within circadian rhythm IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within seed germination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Plant-specific GATA-type zinc finger transcription factor family protein
    NP_191041.1
    • BLUE MICROPYLAR END 3 (BME3); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 11 (TAIR:AT1G08010.2); Has 1480 Blast hits to 1450 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 544; Plants - 806; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).
    NP_850704.1
    • BLUE MICROPYLAR END 3 (BME3); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 11 (TAIR:AT1G08010.2); Has 1480 Blast hits to 1450 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 544; Plants - 806; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20296130..20298827
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180373.3 → NP_850704.1  Plant-specific GATA-type zinc finger transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850704.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SV30
      UniProtKB/TrEMBL
      A0A5S9XLM6, A0A654FH50, B9DHF1
      Conserved Domains (1) summary
      smart00401
      Location:229 → 279
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]

    2. NM_115338.1 → NP_191041.1  Plant-specific GATA-type zinc finger transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191041.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SV30
      UniProtKB/TrEMBL
      A0A5S9XLM6, A0A654FH50, B9DHF1
      Conserved Domains (1) summary
      smart00401
      Location:229 → 279
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SV30.1

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