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    Ubiquitin carboxyl-terminal hydrolase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825021, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ubiquitin carboxyl-terminal hydrolase family protein
    Primary source
    TAIR:AT3G58520
    Locus tag
    AT3G58520
    See related
    Araport:AT3G58520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (21643770..21645548, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene calmodulin-binding family protein Neighboring gene Phosphatidic acid phosphatase (PAP2) family protein Neighboring gene protein phosphatase 2A-4 Neighboring gene DEA(D/H)-box RNA helicase family protein Neighboring gene RNI-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001161210.1
    NM_115714.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Ubiquitin carboxyl-terminal hydrolase family protein
    NP_001154682.1
    • Ubiquitin carboxyl-terminal hydrolase family protein; CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT5G48040.1); Has 412 Blast hits to 406 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 412; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_567068.1
    • Ubiquitin carboxyl-terminal hydrolase family protein; CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT5G48040.1); Has 410 Blast hits to 404 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 410; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21643770..21645548 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115714.4 → NP_567068.1  Ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567068.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFL0, A0A384LAH7, Q940L8, Q9M2G4
      Conserved Domains (1) summary
      pfam11955
      Location:36 → 372
      PORR; Plant organelle RNA recognition domain

    2. NM_001161210.1 → NP_001154682.1  Ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154682.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J5W3, Q9M2G4
      Conserved Domains (1) summary
      pfam11955
      Location:36 → 360
      PORR; Plant organelle RNA recognition domain
    Nucleotide Protein
    Heading Accession and Version

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